PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G156900.1
Common NamePHAVU_011G156900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 382aa    MW: 41679.9 Da    PI: 6.7759
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G156900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.3e-36411662104
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec..eaesssssasnss 86 
                         +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++    +  +a+++   ++++ +  +n+s
  Phvul.011G156900.1  41 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELppwnP--TATSMqpPQQQEIVLRDNKS 129
                         79**************************************************************87542..33223335555555555555 PP

                 TCP  87 sg......................kaaksaa.kskksqksa 104
                          +                      +    ++ ++++ ++++
  Phvul.011G156900.1 130 LSiedpiafgsrgesnvvsgatrvQ----EQfSHQQLESEN 166
                         5567777777766655544322211....111222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.6E-3441166IPR005333Transcription factor, TCP
PROSITE profilePS5136933.27343101IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGESQNHLLL HQTATPSRST MRGGGVGEIV EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR  60
VRLAAHTAIQ FYDVQDRLGY DRPSKAVDWL IKKAKAAIDE LAELPPWNPT ATSMQPPQQQ  120
EIVLRDNKSL SIEDPIAFGS RGESNVVSGA TRVQEQFSHQ QLESENANMS NSKYNSGPGF  180
LPPSLDTDNI AETIKTFFPV EATTTSFQSY PPPAPDLRQQ DLRLSLQSFQ DPIMLQQEPQ  240
SHHEPVLFAG ATLGFDGGSG WSEHQHHHSE EHRFLFGGNS GHGGGFVFNT PAPAFGQFFS  300
QRGPLQSSNT PSVRAWIDPS VDHHHHNHHY LSSLIHQGSV AGGFSAGGGF SGFRIPARIQ  360
GEEEHDGVSD KPSSASSDSR H*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00203DAPTransfer from AT1G53230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007133163.10.0hypothetical protein PHAVU_011G156900g
SwissprotQ9MAH81e-101TCP3_ARATH; Transcription factor TCP3
TrEMBLV7AHT80.0V7AHT8_PHAVU; Uncharacterized protein
STRINGGLYMA12G20160.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-56TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3